Biblio | College of Agricultural Sciences

Found 20 results

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Filters: Keyword is Genomics [Clear All Filters]

2002

D. H. Ware, Jaiswal, P., Ni, J., Yap, I. V., Pan, X., Clark, K. Y., Teytelman, L., Schmidt, S. C., Zhao, W., Chang, K., Cartinhour, S., Stein, L. D., and McCouch, S. R., “Gramene, a tool for grass genomics.”, Plant physiology, vol. 130, pp. 1606-13, 2002.

2006

P. Jaiswal, Ni, J., Yap, I., Ware, D., Spooner, W., Youens-Clark, K., Ren, L., Liang, C., Zhao, W., Ratnapu, K., Faga, B., Canaran, P., Fogleman, M., Hebbard, C., Avraham, S., Schmidt, S., Casstevens, T. M., Buckler, E. S., Stein, L., and McCouch, S., “Gramene: a bird’s eye view of cereal genomes.”, Nucleic acids research, vol. 34, pp. D717-23, 2006.

2008

C. Liang, Jaiswal, P., Hebbard, C., Avraham, S., Buckler, E. S., Casstevens, T., Hurwitz, B., McCouch, S., Ni, J., Pujar, A., Ravenscroft, D., Ren, L., Spooner, W., Tecle, I., Thomason, J., Tung, C. - W., Wei, X., Yap, I., Youens-Clark, K., Ware, D., and Stein, L., “Gramene: a growing plant comparative genomics resource.”, Nucleic acids research, vol. 36, pp. D947-53, 2008.

2010

“The Gene Ontology in 2010: extensions and refinements.”, Nucleic acids research, vol. 38, pp. D331-5, 2010.

2011

P. Jaiswal, “Gramene database: a hub for comparative plant genomics.”, Methods in molecular biology (Clifton, N.J.), vol. 678, pp. 247-75, 2011.

K. Youens-Clark, Buckler, E., Casstevens, T., Chen, C., Declerck, G., Derwent, P., Dharmawardhana, P., Jaiswal, P., Kersey, P., Karthikeyan, A. S., Lu, J., McCouch, S. R., Ren, L., Spooner, W., Stein, J. C., Thomason, J., Wei, S., and Ware, D., “Gramene database in 2010: updates and extensions.”, Nucleic acids research, vol. 39, pp. D1085-94, 2011.

S. Smita, Lenka, S. Keshari, Katiyar, A., Jaiswal, P., Preece, J., and Bansal, K. Chander, “QlicRice: a web interface for abiotic stress responsive QTL and loci interaction channels in rice.”, Database : the journal of biological databases and curation, vol. 2011, p. bar037, 2011.

2013

J. J. Loor, Bionaz, M., and Drackley, J. K., “Systems physiology in dairy cattle: nutritional genomics and beyond.”, Annu Rev Anim Biosci, vol. 1, pp. 365-92, 2013.

2014

G. Winter, Cordente, A. G., and Curtin, C. D., “Formation of hydrogen sulfide from cysteine in Saccharomyces cerevisiae BY4742: genome wide screen reveals a central role of the vacuole.”, PLoS One, vol. 9, no. 12, p. e113869, 2014.

C. D. Curtin and Pretorius, I. S., “Genomic insights into the evolution of industrial yeast species Brettanomyces bruxellensis.”, FEMS Yeast Res, vol. 14, no. 7, pp. 997-1005, 2014.

A. R. Borneman, Zeppel, R., Chambers, P. J., and Curtin, C. D., “Insights into the Dekkera bruxellensis genomic landscape: comparative genomics reveals variations in ploidy and nutrient utilisation potential amongst wine isolates.”, PLoS Genet, vol. 10, no. 2, p. e1004161, 2014.

2016

A. Planchart, Mattingly, C. J., Allen, D., Ceger, P., Casey, W., Hinton, D., Kanungo, J., Kullman, S. W., Tal, T., Bondesson, M., Burgess, S. M., Sullivan, C., Kim, C., Behl, M., Padilla, S., Reif, D. M., Tanguay, R. L., and Hamm, J., “Advancing toxicology research using in vivo high throughput toxicology with small fish models.”, ALTEX, vol. 33, no. 4, pp. 435-452, 2016.

R. VanBuren, Bryant, D., Bushakra, J. M., Vining, K. J., Edger, P. P., Rowley, E. R., Priest, H. D., Michael, T. P., Lyons, E., Filichkin, S. A., Dossett, M., Finn, C. E., Bassil, N. V., and Mockler, T. C., “The genome of black raspberry (Rubus occidentalis).”, Plant J, vol. 87, no. 6, pp. 535-47, 2016.

2017

S. Naithani and Jaiswal, P., “Pathway Analysis and Omics Data Visualization Using Pathway Genome Databases: FragariaCyc, a Case Study.”, Methods in molecular biology (Clifton, N.J.), vol. 1533, pp. 241-256, 2017.

S. Naithani, Geniza, M., and Jaiswal, P., “Variant Effect Prediction Analysis Using Resources Available at Gramene Database.”, Methods in molecular biology (Clifton, N.J.), vol. 1533, pp. 279-297, 2017.

2018

L. Harper, Campbell, J., Cannon, E. K. S., Jung, S., Poelchau, M., Walls, R., Andorf, C., Arnaud, E., Berardini, T. Z., Birkett, C., Cannon, S., Carson, J., Condon, B., Cooper, L., Dunn, N., Elsik, C. G., Farmer, A., Ficklin, S. P., Grant, D., Grau, E., Herndon, N., Hu, Z. - L., Humann, J., Jaiswal, P., Jonquet, C., Laporte, M. - A., Larmande, P., Lazo, G., McCarthy, F., Menda, N., Mungall, C. J., Munoz-Torres, M. C., Naithani, S., Nelson, R., Nesdill, D., Park, C., Reecy, J., Reiser, L., Sanderson, L. - A., Sen, T. Z., Staton, M., Subramaniam, S., Tello-Ruiz, M. Karey, Unda, V., Unni, D., Wang, L., Ware, D., Wegrzyn, J., Williams, J., Woodhouse, M., Yu, J., and Main, D., “AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture.”, Database : the journal of biological databases and curation, vol. 2018, 2018.

S. Naithani, Preece, J., D’Eustachio, P., Gupta, P., Amarasinghe, V., Dharmawardhana, P. D., Wu, G., Fabregat, A., Elser, J. L., Weiser, J., Keays, M., Fuentes, A. Munoz- Pome, Petryszak, R., Stein, L. D., Ware, D., and Jaiswal, P., “Plant Reactome: a resource for plant pathways and comparative analysis.”, Nucleic acids research, vol. 45, pp. D1029-D1039, 2018.

2019

S. Naithani, Gupta, P., Preece, J., Garg, P., Fraser, V., Padgitt-Cobb, L. K., Martin, M., Vining, K., and Jaiswal, P., “Involving community in genes and pathway curation.”, Database : the journal of biological databases and curation, vol. 2019, 2019.

2021

L. K. Padgitt-Cobb, Kingan, S. B., Wells, J., Elser, J., Kronmiller, B., Moore, D., Concepcion, G., Peluso, P., Rank, D., Jaiswal, P., Henning, J., and Hendrix, D. A., “A draft phased assembly of the diploid Cascade hop (Humulus lupulus) genome.”, Plant Genome, vol. 14, no. 1, p. e20072, 2021.

2022

M. Karey Tello-Ruiz, Jaiswal, P., and Ware, D., “Gramene: A Resource for Comparative Analysis of Plants Genomes and Pathways.”, Methods Mol Biol, vol. 2443, pp. 101-131, 2022.