College of Agricultural Sciences

H. B. Runes, Jenkins, J. J., and Bottomley, P. J., “Atrazine degradation by bioaugmented sediment from constructed wetlands.”, Appl Microbiol Biotechnol, vol. 57, no. 3, pp. 427-32, 2001.

T. H. H. Chen and Murata, N., “Glycinebetaine: an effective protectant against abiotic stress in plants.”, Trends Plant Sci, vol. 13, no. 9, pp. 499-505, 2008.

T. H. H. Chen and Murata, N., “Glycinebetaine protects plants against abiotic stress: mechanisms and biotechnological applications.”, Plant Cell Environ, vol. 34, no. 1, pp. 1-20, 2011.

K. Youens-Clark, Buckler, E., Casstevens, T., Chen, C., Declerck, G., Derwent, P., Dharmawardhana, P., Jaiswal, P., Kersey, P., Karthikeyan, A. S., Lu, J., McCouch, S. R., Ren, L., Spooner, W., Stein, J. C., Thomason, J., Wei, S., and Ware, D., “Gramene database in 2010: updates and extensions.”, Nucleic acids research, vol. 39, pp. D1085-94, 2011.

J. Ling, Wells, D. R., Tanguay, R. L., Dickey, L. F., Thompson, W. F., and Gallie, D. R., “Heat shock protein HSP101 binds to the Fed-1 internal light regulator y element and mediates its high translational activity.”, Plant Cell, vol. 12, no. 7, pp. 1213-27, 2000.

P. Williams, Whitfield, M., Biggs, J., Fox, G., Nicolet, P., Shillabeer, N., Sherratt, T., Heneghan, P., Jepson, P., and Maund, S., “How realistic are outdoor microcosms? A comparison of the biota of microcosms and natural ponds.”, Environ Toxicol Chem, vol. 21, no. 1, pp. 143-50, 2002.

S. Naithani and Jaiswal, P., “Pathway Analysis and Omics Data Visualization Using Pathway Genome Databases: FragariaCyc, a Case Study.”, Methods in molecular biology (Clifton, N.J.), vol. 1533, pp. 241-256, 2017.

E. Naumburg, Mata-González, R., Hunter, R. G., McLendon, T., and Martin, D. W., “Phreatophytic vegetation and groundwater fluctuations: a review of current research and application of ecosystem response modeling with an emphasis on great basin vegetation”, Environmental Management, vol. 35, no. 6, pp. 726 - 740, 2005.

S. Avraham, Tung, C. - W., Ilic, K., Jaiswal, P., Kellogg, E. A., McCouch, S., Pujar, A., Reiser, L., Rhee, S. Y., Sachs, M. M., Schaeffer, M., Stein, L., Stevens, P., Vincent, L., Zapata, F., and Ware, D., “The Plant Ontology Database: a community resource for plant structure and developmental stages controlled vocabulary and annotations.”, Nucleic acids research, vol. 36, pp. D449-54, 2008.

S. Naithani, Preece, J., D’Eustachio, P., Gupta, P., Amarasinghe, V., Dharmawardhana, P. D., Wu, G., Fabregat, A., Elser, J. L., Weiser, J., Keays, M., Fuentes, A. Munoz- Pome, Petryszak, R., Stein, L. D., Ware, D., and Jaiswal, P., “Plant Reactome: a resource for plant pathways and comparative analysis.”, Nucleic acids research, vol. 45, pp. D1029-D1039, 2018.

L. Cooper, Meier, A., Laporte, M. - A., Elser, J. L., Mungall, C., Sinn, B. T., Cavaliere, D., Carbon, S., Dunn, N. A., Smith, B., Qu, B., Preece, J., Zhang, E., Todorovic, S., Gkoutos, G., Doonan, J. H., Stevenson, D. W., Arnaud, E., and Jaiswal, P., “The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics.”, Nucleic acids research, vol. 46, pp. D1168-D1180, 2018.

J. Li, Shang, X., Zhao, Z., Tanguay, R. L., Dong, Q., and Huang, C., “Polycyclic aromatic hydrocarbons in water, sediment, soil, and plants of the Aojiang River waterway in Wenzhou, China.”, J Hazard Mater, vol. 173, no. 1-3, pp. 75-81, 2010.

S. Conn, Curtin, C. D., Bézier, A., Franco, C., and Zhang, W., “Purification, molecular cloning, and characterization of glutathione S-transferases (GSTs) from pigmented Vitis vinifera L. cell suspension cultures as putative anthocyanin transport proteins.”, J Exp Bot, vol. 59, no. 13, pp. 3621-34, 2008.

S. Naithani, Geniza, M., and Jaiswal, P., “Variant Effect Prediction Analysis Using Resources Available at Gramene Database.”, Methods in molecular biology (Clifton, N.J.), vol. 1533, pp. 279-297, 2017.