Biblio

Found 16 results
Author Title [ Type(Asc)] Year
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Journal Article
S. Naithani, Geniza, M., and Jaiswal, P., Variant Effect Prediction Analysis Using Resources Available at Gramene Database., Methods in molecular biology (Clifton, N.J.), vol. 1533, pp. 279-297, 2017.
S. Smita, Lenka, S. Keshari, Katiyar, A., Jaiswal, P., Preece, J., and Bansal, K. Chander, QlicRice: a web interface for abiotic stress responsive QTL and loci interaction channels in rice., Database : the journal of biological databases and curation, vol. 2011, p. bar037, 2011.
L. Cooper, Meier, A., Laporte, M. - A., Elser, J. L., Mungall, C., Sinn, B. T., Cavaliere, D., Carbon, S., Dunn, N. A., Smith, B., Qu, B., Preece, J., Zhang, E., Todorovic, S., Gkoutos, G., Doonan, J. H., Stevenson, D. W., Arnaud, E., and Jaiswal, P., The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics., Nucleic acids research, vol. 46, pp. D1168-D1180, 2018.
S. Naithani, Preece, J., D’Eustachio, P., Gupta, P., Amarasinghe, V., Dharmawardhana, P. D., Wu, G., Fabregat, A., Elser, J. L., Weiser, J., Keays, M., Fuentes, A. Munoz- Pome, Petryszak, R., Stein, L. D., Ware, D., and Jaiswal, P., Plant Reactome: a resource for plant pathways and comparative analysis., Nucleic acids research, vol. 45, pp. D1029-D1039, 2018.
S. Avraham, Tung, C. - W., Ilic, K., Jaiswal, P., Kellogg, E. A., McCouch, S., Pujar, A., Reiser, L., Rhee, S. Y., Sachs, M. M., Schaeffer, M., Stein, L., Stevens, P., Vincent, L., Zapata, F., and Ware, D., The Plant Ontology Database: a community resource for plant structure and developmental stages controlled vocabulary and annotations., Nucleic acids research, vol. 36, pp. D449-54, 2008.
S. Naithani and Jaiswal, P., Pathway Analysis and Omics Data Visualization Using Pathway Genome Databases: FragariaCyc, a Case Study., Methods in molecular biology (Clifton, N.J.), vol. 1533, pp. 241-256, 2017.
S. Naithani, Gupta, P., Preece, J., Garg, P., Fraser, V., Padgitt-Cobb, L. K., Martin, M., Vining, K., and Jaiswal, P., Involving community in genes and pathway curation., Database : the journal of biological databases and curation, vol. 2019, 2019.
K. Youens-Clark, Buckler, E., Casstevens, T., Chen, C., Declerck, G., Derwent, P., Dharmawardhana, P., Jaiswal, P., Kersey, P., Karthikeyan, A. S., Lu, J., McCouch, S. R., Ren, L., Spooner, W., Stein, J. C., Thomason, J., Wei, S., and Ware, D., Gramene database in 2010: updates and extensions., Nucleic acids research, vol. 39, pp. D1085-94, 2011.
P. Jaiswal, Gramene database: a hub for comparative plant genomics., Methods in molecular biology (Clifton, N.J.), vol. 678, pp. 247-75, 2011.
D. H. Ware, Jaiswal, P., Ni, J., Yap, I. V., Pan, X., Clark, K. Y., Teytelman, L., Schmidt, S. C., Zhao, W., Chang, K., Cartinhour, S., Stein, L. D., and McCouch, S. R., Gramene, a tool for grass genomics., Plant physiology, vol. 130, pp. 1606-13, 2002.
D. Ware, Jaiswal, P., Ni, J., Pan, X., Chang, K., Clark, K., Teytelman, L., Schmidt, S., Zhao, W., Cartinhour, S., McCouch, S., and Stein, L., Gramene: a resource for comparative grass genomics., Nucleic acids research, vol. 30, pp. 103-5, 2002.
C. Liang, Jaiswal, P., Hebbard, C., Avraham, S., Buckler, E. S., Casstevens, T., Hurwitz, B., McCouch, S., Ni, J., Pujar, A., Ravenscroft, D., Ren, L., Spooner, W., Tecle, I., Thomason, J., Tung, C. - W., Wei, X., Yap, I., Youens-Clark, K., Ware, D., and Stein, L., Gramene: a growing plant comparative genomics resource., Nucleic acids research, vol. 36, pp. D947-53, 2008.
P. Jaiswal, Ni, J., Yap, I., Ware, D., Spooner, W., Youens-Clark, K., Ren, L., Liang, C., Zhao, W., Ratnapu, K., Faga, B., Canaran, P., Fogleman, M., Hebbard, C., Avraham, S., Schmidt, S., Casstevens, T. M., Buckler, E. S., Stein, L., and McCouch, S., Gramene: a bird’s eye view of cereal genomes., Nucleic acids research, vol. 34, pp. D717-23, 2006.
The Gene Ontology in 2010: extensions and refinements., Nucleic acids research, vol. 38, pp. D331-5, 2010.
Y. Yamazaki and Jaiswal, P., Biological ontologies in rice databases. An introduction to the activities in Gramene and Oryzabase., Plant & cell physiology, vol. 46, pp. 63-8, 2005.
L. Harper, Campbell, J., Cannon, E. K. S., Jung, S., Poelchau, M., Walls, R., Andorf, C., Arnaud, E., Berardini, T. Z., Birkett, C., Cannon, S., Carson, J., Condon, B., Cooper, L., Dunn, N., Elsik, C. G., Farmer, A., Ficklin, S. P., Grant, D., Grau, E., Herndon, N., Hu, Z. - L., Humann, J., Jaiswal, P., Jonquet, C., Laporte, M. - A., Larmande, P., Lazo, G., McCarthy, F., Menda, N., Mungall, C. J., Munoz-Torres, M. C., Naithani, S., Nelson, R., Nesdill, D., Park, C., Reecy, J., Reiser, L., Sanderson, L. - A., Sen, T. Z., Staton, M., Subramaniam, S., Tello-Ruiz, M. Karey, Unda, V., Unni, D., Wang, L., Ware, D., Wegrzyn, J., Williams, J., Woodhouse, M., Yu, J., and Main, D., AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture., Database : the journal of biological databases and curation, vol. 2018, 2018.