College of Agricultural Sciences

S. - J. Ahn, Oh, H. - W., Corcoran, J., Kim, J. - A., Park, K. - C., Park, C. Gyoo, and Choi, M. - Y., “Sex-biased gene expression in antennae of Drosophila suzukii.”, Arch Insect Biochem Physiol, vol. 104, no. 1, p. e21660, 2020.

D. E. Haggard, Noyes, P. D., Waters, K. M., and Tanguay, R. L., “Transcriptomic and phenotypic profiling in developing zebrafish exposed to thyroid hormone receptor agonists.”, Reprod Toxicol, vol. 77, pp. 80-93, 2018.

E. F. O'Donnell, Jang, H. Sang, Pearce, M. C., Kerkvliet, N. I., and Kolluri, S., “The aryl hydrocarbon receptor is required for induction of p21cip1/waf1 expression and growth inhibition by SU5416 in hepatoma cells.”, Oncotarget, vol. 8, no. 15, pp. 25211-25225, 2017.

A. C Quandt, Di, Y., Elser, J., Jaiswal, P., and Spatafora, J. W., “Differential Expression of Genes Involved in Host Recognition, Attachment, and Degradation in the Mycoparasite Tolypocladium ophioglossoides.”, G3 (Bethesda, Md.), vol. 6, pp. 731-41, 2016.

M. F. Jiang, Lee, J. Nam, Bionaz, M., Deng, X. Yu, and Wang, Y., “Evaluation of Suitable Internal Control Genes for RT-qPCR in Yak Mammary Tissue during the Lactation Cycle.”, PLoS One, vol. 11, no. 1, p. e0147705, 2016.

D. E. Haggard, Noyes, P. D., Waters, K. M., and Tanguay, R. L., “Phenotypically anchored transcriptome profiling of developmental exposure to the antimicrobial agent, triclosan, reveals hepatotoxicity in embryonic zebrafish.”, Toxicol Appl Pharmacol, vol. 308, pp. 32-45, 2016.

H. Xu, Bionaz, M., Sloboda, D. M., Ehrlich, L., Li, S., Newnham, J. P., Dudenhausen, J. W., Henrich, W., Plagemann, A., Challis, J. Rg, and Braun, T., “The dilution effect and the importance of selecting the right internal control genes for RT-qPCR: a paradigmatic approach in fetal sheep.”, BMC Res Notes, vol. 8, p. 58, 2015.

B. C. Goodale, La Du, J., Tilton, S. C., Sullivan, C. M., Bisson, W. H., Waters, K. M., and Tanguay, R. L., “Ligand-Specific Transcriptional Mechanisms Underlie Aryl Hydrocarbon Receptor-Mediated Developmental Toxicity of Oxygenated PAHs.”, Toxicol Sci, vol. 147, no. 2, pp. 397-411, 2015.

L. A. Sayavedra-Soto, Ferrell, R., Dobie, M., Mellbye, B., Chaplen, F., Buchanan, A., Chang, J. H., Bottomley, P. J., and Arp, D. J., “Nitrobacter winogradskyi transcriptomic response to low and high ammonium concentrations.”, FEMS Microbiol Lett, vol. 362, no. 3, pp. 1-7, 2015.

C. D. Curtin and Pretorius, I. S., “Genomic insights into the evolution of industrial yeast species Brettanomyces bruxellensis.”, FEMS Yeast Res, vol. 14, no. 7, pp. 997-1005, 2014.

K. Shahzad, Bionaz, M., Trevisi, E., Bertoni, G., Rodriguez-Zas, S. L., and Loor, J. J., “Integrative analyses of hepatic differentially expressed genes and blood biomarkers during the peripartal period between dairy cows overfed or restricted-fed energy prepartum.”, PLoS One, vol. 9, no. 6, p. e99757, 2014.

K. S. Saili, Tilton, S. C., Waters, K. M., and Tanguay, R. L., “Global gene expression analysis reveals pathway differences between teratogenic and non-teratogenic exposure concentrations of bisphenol A and 17β-estradiol in embryonic zebrafish.”, Reprod Toxicol, vol. 38, pp. 89-101, 2013.

T. M. Grala, Kay, J. K., Phyn, C. V. C., Bionaz, M., Walker, C. G., Rius, A. G., Snell, R. G., and Roche, J. R., “Reducing milking frequency during nutrient restriction has no effect on the hepatic transcriptome of lactating dairy cattle.”, Physiol Genomics, vol. 45, no. 23, pp. 1157-67, 2013.

L. Truong, Tilton, S. C., Zaikova, T., Richman, E., Waters, K. M., Hutchison, J. E., and Tanguay, R. L., “Surface functionalities of gold nanoparticles impact embryonic gene expression responses.”, Nanotoxicology, vol. 7, no. 2, pp. 192-201, 2013.

S. Lal, La Du, J., Tanguay, R. L., and Greenwood, J. A., “Calpain 2 is required for the invasion of glioblastoma cells in the zebrafish brain microenvironment.”, J Neurosci Res, vol. 90, no. 4, pp. 769-81, 2012.

J. Chen, Huang, C., Truong, L., La Du, J., Tilton, S. C., Waters, K. M., Lin, K., Tanguay, R. L., and Dong, Q., “Early life stage trimethyltin exposure induces ADP-ribosylation factor expression and perturbs the vascular system in zebrafish.”, Toxicology, vol. 302, no. 2-3, pp. 129-39, 2012.

S. Xu, Liu, H., Fan, Y., Schaller, R., Jiao, J., and Chaplen, F., “Enhanced performance and mechanism study of microbial electrolysis cells using Fe nanoparticle-decorated anodes.”, Appl Microbiol Biotechnol, vol. 93, no. 2, pp. 871-80, 2012.

M. Bionaz, Thering, B. J., and Loor, J. J., “Fine metabolic regulation in ruminants via nutrient-gene interactions: saturated long-chain fatty acids increase expression of genes involved in lipid metabolism and immune response partly through PPAR-α activation.”, Br J Nutr, vol. 107, no. 2, pp. 179-91, 2012.

T. L. Tal, Franzosa, J. A., Tilton, S. C., Philbrick, K. A., Iwaniec, U. T., Turner, R. T., Waters, K. M., and Tanguay, R. L., “MicroRNAs control neurobehavioral development and function in zebrafish.”, FASEB J, vol. 26, no. 4, pp. 1452-61, 2012.

M. Bionaz, Periasamy, K., Rodriguez-Zas, S. L., Hurley, W. L., and Loor, J. J., “A novel dynamic impact approach (DIA) for functional analysis of time-course omics studies: validation using the bovine mammary transcriptome.”, PLoS One, vol. 7, no. 3, p. e32455, 2012.

M. Bionaz, Periasamy, K., Rodriguez-Zas, S. L., Everts, R. E., Lewin, H. A., Hurley, W. L., and Loor, J. J., “Old and new stories: revelations from functional analysis of the bovine mammary transcriptome during the lactation cycle.”, PLoS One, vol. 7, no. 3, p. e33268, 2012.

E. Monaco, Bionaz, M., Rodriguez-Zas, S., Hurley, W. L., and Wheeler, M. B., “Transcriptomics comparison between porcine adipose and bone marrow mesenchymal stem cells during in vitro osteogenic and adipogenic differentiation.”, PLoS One, vol. 7, no. 3, p. e32481, 2012.

E. Ho, Dukovcic, S., Hobson, B., Wong, C. P., Miller, G., Hardin, K., Traber, M. G., and Tanguay, R. L., “Zinc transporter expression in zebrafish (Danio rerio) during development.”, Comp Biochem Physiol C Toxicol Pharmacol, vol. 155, no. 1, pp. 26-32, 2012.

V. V. Peremyslov, Mockler, T. C., Filichkin, S. A., Fox, S. E., Jaiswal, P., Makarova, K. S., Koonin, E. V., and Dolja, V. V., “Expression, splicing, and evolution of the myosin gene family in plants.”, Plant physiology, vol. 155, pp. 1191-204, 2011.

V. Shulaev, Sargent, D. J., Crowhurst, R. N., Mockler, T. C., Folkerts, O., Delcher, A. L., Jaiswal, P., Mockaitis, K., Liston, A., Mane, S. P., Burns, P., Davis, T. M., Slovin, J. P., Bassil, N., Hellens, R. P., Evans, C., Harkins, T., Kodira, C., Desany, B., Crasta, O. R., Jensen, R. V., Allan, A. C., Michael, T. P., Setubal, J. Carlos, Celton, J. - M., D Rees, J. G., Williams, K. P., Holt, S. H., Rojas, J. Jairo Ruiz, Chatterjee, M., Liu, B., Silva, H., Meisel, L., Adato, A., Filichkin, S. A., Troggio, M., Viola, R., Ashman, T. - L., Wang, H., Dharmawardhana, P., Elser, J., Raja, R., Priest, H. D., Bryant, D. W., Fox, S. E., Givan, S. A., Wilhelm, L. J., Naithani, S., Christoffels, A., Salama, D. Y., Carter, J., Girona, E. Lopez, Zdepski, A., Wang, W., Kerstetter, R. A., Schwab, W., Korban, S. S., Davik, J., Monfort, A., Denoyes-Rothan, B., Arus, P., Mittler, R., Flinn, B., Aharoni, A., Bennetzen, J. L., Salzberg, S. L., Dickerman, A. W., Velasco, R., Borodovsky, M., Veilleux, R. E., and Folta, K. M., “The genome of woodland strawberry(Fragaria vesca).”, Nature genetics, vol. 43, pp. 109-16, 2011.