College of Agricultural Sciences

H. Gütling, Bionaz, M., Sloboda, D. M., Ehrlich, L., Braun, F., Gramzow, A. K., Henrich, W., Plagemann, A., and Braun, T., “The importance of selecting the right internal control gene to study the effects of antenatal glucocorticoid administration in human placenta.”, Placenta, vol. 44, pp. 19-22, 2016.

K. Shahzad, Bionaz, M., Trevisi, E., Bertoni, G., Rodriguez-Zas, S. L., and Loor, J. J., “Integrative analyses of hepatic differentially expressed genes and blood biomarkers during the peripartal period between dairy cows overfed or restricted-fed energy prepartum.”, PLoS One, vol. 9, no. 6, p. e99757, 2014.

S. Tramontana, Bionaz, M., Sharma, A., Graugnard, D. E., Cutler, E. A., Ajmone-Marsan, P., Hurley, W. L., and Loor, J. J., “Internal controls for quantitative polymerase chain reaction of swine mammary glands during pregnancy and lactation.”, J Dairy Sci, vol. 91, no. 8, pp. 3057-66, 2008.

B. J. Thering, Bionaz, M., and Loor, J. J., “Long-chain fatty acid effects on peroxisome proliferator-activated receptor-alpha-regulated genes in Madin-Darby bovine kidney cells: optimization of culture conditions using palmitate.”, J Dairy Sci, vol. 92, no. 5, pp. 2027-37, 2009.

M. Bionaz, Periasamy, K., Rodriguez-Zas, S. L., Hurley, W. L., and Loor, J. J., “A novel dynamic impact approach (DIA) for functional analysis of time-course omics studies: validation using the bovine mammary transcriptome.”, PLoS One, vol. 7, no. 3, p. e32455, 2012.

J. J. Loor, Everts, R. E., Bionaz, M., Dann, H. M., Morin, D. E., Oliveira, R., Rodriguez-Zas, S. L., Drackley, J. K., and Lewin, H. A., “Nutrition-induced ketosis alters metabolic and signaling gene networks in liver of periparturient dairy cows.”, Physiol Genomics, vol. 32, no. 1, pp. 105-16, 2007.

M. Bionaz, Periasamy, K., Rodriguez-Zas, S. L., Everts, R. E., Lewin, H. A., Hurley, W. L., and Loor, J. J., “Old and new stories: revelations from functional analysis of the bovine mammary transcriptome during the lactation cycle.”, PLoS One, vol. 7, no. 3, p. e33268, 2012.

H. F. Xu, Luo, J., Zhao, W. S., Yang, Y. C., Tian, H. B., Shi, H. B., and Bionaz, M., “Overexpression of SREBP1 (sterol regulatory element binding protein 1) promotes de novo fatty acid synthesis and triacylglycerol accumulation in goat mammary epithelial cells.”, J Dairy Sci, vol. 99, no. 1, pp. 783-95, 2016.

A. K. G. Kadegowda, Bionaz, M., Piperova, L. S., Erdman, R. A., and Loor, J. J., “Peroxisome proliferator-activated receptor-gamma activation and long-chain fatty acids alter lipogenic gene networks in bovine mammary epithelial cells to various extents.”, J Dairy Sci, vol. 92, no. 9, pp. 4276-89, 2009.

M. Bionaz, Hausman, G. J., Loor, J. J., and Mandard, S., “Physiological and Nutritional Roles of PPAR across Species.”, PPAR Res, vol. 2013, p. 807156, 2013.

M. Bionaz, Trevisi, E., Calamari, L., Librandi, F., Ferrari, A., and Bertoni, G., “Plasma paraoxonase, health, inflammatory conditions, and liver function in transition dairy cows.”, J Dairy Sci, vol. 90, no. 4, pp. 1740-50, 2007.

J. S. Osorio and Bionaz, M., “Plasmid transfection in bovine cells: Optimization using a realtime monitoring of green fluorescent protein and effect on gene reporter assay.”, Gene, vol. 626, pp. 200-208, 2017.

T. M. Grala, Kay, J. K., Phyn, C. V. C., Bionaz, M., Walker, C. G., Rius, A. G., Snell, R. G., and Roche, J. R., “Reducing milking frequency during nutrient restriction has no effect on the hepatic transcriptome of lactating dairy cattle.”, Physiol Genomics, vol. 45, no. 23, pp. 1157-67, 2013.

M. Bionaz and Loor, J. J., “Ruminant metabolic systems biology: reconstruction and integration of transcriptome dynamics underlying functional responses of tissues to nutrition and physiological state.”, Gene Regul Syst Bio, vol. 6, pp. 109-25, 2012.

E. Monaco, Bionaz, M., de Lima, A. Sobreira, Hurley, W. L., Loor, J. J., and Wheeler, M. B., “Selection and reliability of internal reference genes for quantitative PCR verification of transcriptomics during the differentiation process of porcine adult mesenchymal stem cells.”, Stem Cell Res Ther, vol. 1, no. 1, p. 7, 2010.

E. Monaco, Bionaz, M., Hollister, S. J., and Wheeler, M. B., “Strategies for regeneration of the bone using porcine adult adipose-derived mesenchymal stem cells.”, Theriogenology, vol. 75, no. 8, pp. 1381-99, 2011.

J. J. Loor, Bionaz, M., and Drackley, J. K., “Systems physiology in dairy cattle: nutritional genomics and beyond.”, Annu Rev Anim Biosci, vol. 1, pp. 365-92, 2013.

M. Bionaz, Monaco, E., and Wheeler, M. B., “Transcription Adaptation during In Vitro Adipogenesis and Osteogenesis of Porcine Mesenchymal Stem Cells: Dynamics of Pathways, Biological Processes, Up-Stream Regulators, and Gene Networks.”, PLoS One, vol. 10, no. 9, p. e0137644, 2015.

D. Bu, Bionaz, M., Wang, M., Nan, X., Ma, L., and Wang, J., “Transcriptome difference and potential crosstalk between liver and mammary tissue in mid-lactation primiparous dairy cows.”, PLoS One, vol. 12, no. 3, p. e0173082, 2017.

E. Monaco, Bionaz, M., Rodriguez-Zas, S., Hurley, W. L., and Wheeler, M. B., “Transcriptomics comparison between porcine adipose and bone marrow mesenchymal stem cells during in vitro osteogenic and adipogenic differentiation.”, PLoS One, vol. 7, no. 3, p. e32481, 2012.

M. Bionaz, Osorio, J. S., and Loor, J. J., “TRIENNIAL LACTATION SYMPOSIUM: Nutrigenomics in dairy cows: Nutrients, transcription factors, and techniques.”, J Anim Sci, vol. 93, no. 12, pp. 5531-53, 2015.

J. J. Loor, Vailati-Riboni, M., McCann, J. C., Zhou, Z., and Bionaz, M., “TRIENNIAL LACTATION SYMPOSIUM: Nutrigenomics in livestock: Systems biology meets nutrition.”, J Anim Sci, vol. 93, no. 12, pp. 5554-74, 2015.

S. Bollmann, Bu, D., Wang, J., and Bionaz, M., “Unmasking Upstream Gene Expression Regulators with miRNA-corrected mRNA Data.”, Bioinform Biol Insights, vol. 9, no. Suppl 4, pp. 33-48, 2015.

M. Rubessa, Polkoff, K., Bionaz, M., Monaco, E., Milner, D. J., Holllister, S. J., Goldwasser, M. S., and Wheeler, M. B., “Use of Pig as a Model for Mesenchymal Stem Cell Therapies for Bone Regeneration.”, Anim Biotechnol, pp. 1-13, 2017.