Biblio
“Separating the drivers from the driven: Integrative network and pathway approaches aid identification of disease biomarkers from high-throughput data.”, Dis Markers, vol. 28, no. 4, pp. 253-66, 2010.
, “Bioinformatics resource manager v2.3: an integrated software environment for systems biology with microRNA and cross-species analysis tools”, BMC Bioinformatics, vol. 13, no. 1, p. 311, 2012.
, “Cell type-dependent gene transcription profile in a three-dimensional human skin tissue model exposed to low doses of ionizing radiation: Implications for medical exposures”, Environmental and Molecular Mutagenesis, vol. 53, no. 4, pp. 247 - 259, 2012.
, “MicroRNAs control neurobehavioral development and function in zebrafish”, The FASEB Journal, vol. 26, no. 4, pp. 1452 - 1461, 2012.
, “Polycyclic aromatic hydrocarbons as skin carcinogens: Comparison of benzo[a]pyrene, dibenzo[def,p]chrysene and three environmental mixtures in the FVB/N mouse”, Toxicology and Applied Pharmacology, vol. 264, no. 3, pp. 377 - 386, 2012.
, “Application of a fuzzy neural network model in predicting polycyclic aromatic hydrocarbon-mediated perturbations of the Cyp1b1 transcriptional regulatory network in mouse skin”, Toxicology and Applied Pharmacology, vol. 267, no. 2, pp. 192 - 199, 2013.
, “Diet-induced obesity reprograms the inflammatory response of the murine lung to inhaled endotoxin”, Toxicology and Applied Pharmacology, vol. 267, no. 2, pp. 137 - 148, 2013.
, “Dysregulation of Macrophage Activation Profiles by Engineered Nanoparticles”, ACS Nano, vol. 7, no. 8, pp. 6997 - 7010, 2013.
, “Impaired Transcriptional Response of the Murine Heart to Cigarette Smoke in the Setting of High Fat Diet and Obesity”, Chemical Research in Toxicology, vol. 26, no. 7, pp. 1034 - 1042, 2013.
, “A Network Integration Approach to Predict Conserved Regulators Related to Pathogenicity of Influenza and SARS-CoV Respiratory Viruses”, PLoS ONE, vol. 8, no. 7, p. e69374, 2013.
, “Release of Severe Acute Respiratory Syndrome Coronavirus Nuclear Import Block Enhances Host Transcription in Human Lung Cells”, Journal of Virology, vol. 87, no. 7, pp. 3885 - 3902, 2013.
, “Retinoic acid-dependent regulation of miR-19 expression elicits vertebrate axis defects”, The FASEB Journal, vol. 27, no. 12, pp. 4866 - 4876, 2013.
, “Structurally distinct polycyclic aromatic hydrocarbons induce differential transcriptional responses in developing zebrafish”, Toxicology and Applied Pharmacology, vol. 272, no. 3, pp. 656 - 670, 2013.
, “Comparative iron oxide nanoparticle cellular dosimetry and response in mice by the inhalation and liquid cell culture exposure routes”, Particle and Fibre Toxicology, vol. 1129871397757364843141613724956113181942141321356461541073447, no. 1Suppl 1, 2014.
, “A comprehensive collection of systems biology data characterizing the host response to viral infection”, Scientific Data, vol. 1, p. 140033, 2014.
, “Three human cell types respond to multi-walled carbon nanotubes and titanium dioxide nanobelts with cell-specific transcriptomic and proteomic expression patterns”, Nanotoxicology, vol. 8, no. 5, pp. 533 - 548, 2014.
, “Cytochrome P450 1b1 in polycyclic aromatic hydrocarbon (PAH)-induced skin carcinogenesis: Tumorigenicity of individual PAHs and coal-tar extract, DNA adduction and expression of select genes in the Cyp1b1 knockout mouse”, Toxicology and Applied Pharmacology, vol. 287, no. 2, pp. 149 - 160, 2015.
, “Data integration reveals key homeostatic mechanisms following low dose radiation exposure”, Toxicology and Applied Pharmacology, vol. 285, no. 1, pp. 1 - 11, 2015.
, “Ligand-specific transcriptional mechanisms underlie aryl hydrocarbon receptor-mediated developmental toxicity of oxygenated PAHs”, Toxicological Sciences, p. kfv139, 2015.
, “Mechanism-Based Classification of PAH Mixtures to Predict Carcinogenic Potential”, Toxicological Sciences, vol. 146, no. 1, pp. 135 - 145, 2015.
, “Metabolite Signatures in Hydrophilic Extracts of Mouse Lungs Exposed to Cigarette Smoke Revealed by 1H NMR Metabolomics Investigation”, Journal of Postgenomics Drug & Biomarker Development, vol. 05, no. 02, 2015.
, “Muscle Segment Homeobox Genes Direct Embryonic Diapause by Limiting Inflammation in the Uterus”, Journal of Biological Chemistry, vol. 290, no. 24, pp. 15337 - 15349, 2015.
, “Integrated Omics Analysis of Pathogenic Host Responses during Pandemic H1N1 Influenza Virus Infection: The Crucial Role of Lipid Metabolism”, Cell Host & Microbe, vol. 19, no. 2, pp. 254 - 266, 2016.
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